Structural Bioinformatics
Head: doc. RNDr. Radka Svobodová, Ph.D.
Research Topics
Our research is focused on analysing the 3D structure of proteins, protein fragments, and whole protein families. Specifically, we concentrate on visualization, validation, annotation, fragment detection, and characterization of proteins and protein families. We also develop software tools for performing these types of analyses.
Main objectives:
- Visualisation of protein 1D, 2D, and 3D structure
- Detection of protein channels and fragments
- Validation of protein and ligand structure
- Calculation of partial atomic charges
- Annotation of protein structure and analysis of protein families
More information about our group can be found on the website.
Team Members
Sub-group Leaders
- RNDr. David Sehnal, Ph.D.
- RNDr. Tomáš Raček, Ph.D.
- Mgr. Vladimír Horský, Ph.D.
Researchers
- Aliaksei Chareshneu, Ph.D.
- Mgr. Veronika Horská, Ph.D.
- RNDr. Ondřej Schindler, Ph.D.
- RNDr. Ivana Hutařová Vařeková, PhD.
PhD Students
- Mgr. Bc. Gabriela Bučeková
- Mgr. Viktoriia Doshchenko
- Mgr. Adrián Rošinec
- Mgr. Bc. Jana Porubská
- Mgr. Ing. Tomáš Svoboda
Bc/Mgr Students
- Bc. Martin Jediný
- Bc. Kamil Jelínek
- Bc. Michal Oleksik
- Bc. Amálie Švehlová
- Bc. Dominik Tichý
- Bc. Dušan Veľký
- Lukáš Bohuš
- Margarita Marsová